PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G25950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 361aa    MW: 38658.9 Da    PI: 7.0122
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G25950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP155.62.8e-48972571136
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssas...nsssg. 88 
                      aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++++ss   c  + +sss s++       + 
  LPERR03G25950.1  97 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSDDASSV-VCedDGGSSSLSVDaaaG---Sk 186
                      589**************************************************************55444.554322333333333330...13 PP

              TCP  89 ......................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                            k++++aa++k++++ ++++l + + esrakar+rarertrek+r+++++
  LPERR03G25950.1 187 hhtntnnppgaaaegkkpaaaaKSRRAAATPKPPRRLSNAHLPVPDkESRAKARERARERTREKNRMRWVT 257
                      34445567888899999999977777777888888888888777666*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-4599253IPR005333Transcription factor, TCP
PROSITE profilePS5136935.325100158IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.211233250IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDIPLYQQLQ LTPPSPPKPA IDHHQSSFFY YSPSFAAAAA AAATADETIG SPPVMLHPFM  60
DIEQQQQQPD QPQQQTATAV EDVAAGAGAA DILDGFAAAR KDRHSKICTA GGMRDRRMRL  120
SLDVARKFFA LQDMLGFDKA SKTVQWLLNM SKAAIREIMS DDASSVVCED DGGSSSLSVD  180
AAAGSKHHTN TNNPPGAAAE GKKPAAAAKS RRAAATPKPP RRLSNAHLPV PDKESRAKAR  240
ERARERTREK NRMRWVTLAS AISVEQHAAT ADKSPGAASP NNLQQMSAEL EEGSSSTLHN  300
SGRMQEISVA SEASDDVIMA FAHGGGAYGG GGDSSNYYQQ QPQDQWELGG VVFASSRHHH  360
Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0883431e-98AB088343.1 Oryza sativa Japonica Group OsTB1 gene for teosinte branched1 protein, complete cds.
GenBankAB4915551e-98AB491555.1 Oryza nivara tb1 gene for teosinte branched 1, complete cds, strain: W0106.
GenBankAB4915561e-98AB491556.1 Oryza rufipogon tb1 gene for teosinte branched 1, complete cds, strain: W1294.
GenBankAB4915571e-98AB491557.1 Oryza barthii tb1 gene for teosinte branched 1, complete cds, strain: W0652.
GenBankAC0917751e-98AC091775.10 Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence.
GenBankAF3221431e-98AF322143.1 Oryza sativa teosinte branched1 protein (tb1) gene, partial cds.
GenBankAK1070831e-98AK107083.1 Oryza sativa Japonica Group cDNA clone:002-121-G01, full insert sequence.
GenBankAP0149591e-98AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY0432151e-98AY043215.1 Oryza sativa teosinte branched1 protein (tb1) mRNA, complete cds.
GenBankAY2860021e-98AY286002.1 Oryza sativa (indica cultivar-group) teosinte-branching 1 (TB1) gene, complete cds.
GenBankCP0126111e-98CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630237.11e-128PREDICTED: transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI22e-81TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A0D9VXZ90.0A0A0D9VXZ9_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g49880.11e-128(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-25TCP domain protein 12